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  "Package": "homologene",
  "Type": "Package",
  "Title": "Quick Access to Homologene and Gene Annotation Updates",
  "Version": "1.7.68.23.10.31",
  "Date": "2023-10-31",
  "Authors@R": "c(\nperson(\"Ogan\", \"Mancarci\", email = \"ogan.mancarci@gmail.com\", role = c(\"aut\", \"cre\")),\nperson(\"Leon\",\"French\", role = c('ctb')))",
  "BugReports": "https://github.com/oganm/homologene/issues",
  "URL": "https://github.com/oganm/homologene",
  "Description": "A wrapper for the homologene database by the National\nCenter for Biotechnology Information ('NCBI'). It allows\nsearching for gene homologs across species. Data in this\npackage can be found at\n<ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package\nalso includes an updated version of the homologene database\nwhere gene identifiers and symbols are replaced with their\nlatest (at the time of submission) version and functions to\nfetch latest annotation data to keep updated.",
  "License": "MIT + file LICENSE",
  "LazyData": "true",
  "RoxygenNote": "7.2.3",
  "Config/pak/sysreqs": "libxml2-dev libssl-dev libx11-dev",
  "Repository": "https://oganm.r-universe.dev",
  "Date/Publication": "2023-11-02 01:05:47 UTC",
  "RemoteUrl": "https://github.com/oganm/homologene",
  "RemoteRef": "HEAD",
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  "Packaged": {
    "Date": "2026-07-06 09:45:20 UTC",
    "User": "root"
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  "Author": "Ogan Mancarci [aut, cre],\nLeon French [ctb]",
  "Maintainer": "Ogan Mancarci <ogan.mancarci@gmail.com>",
  "_user": "oganm",
  "_type": "src",
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    "author": "OganM <ogan.mancarcii@gmail.com>",
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    "message": "support for orthologue search in diopt\n",
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  "_tags": [],
  "_topics": [
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    "homologene",
    "mancarci-2017",
    "ncbi-taxonomy",
    "ogan-bio",
    "species",
    "wrapper"
  ],
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  "_assets": [
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    "extra/citation.html",
    "extra/citation.json",
    "extra/citation.txt",
    "extra/contents.json",
    "extra/homologene.html",
    "extra/NEWS.html",
    "extra/NEWS.txt",
    "extra/readme.html",
    "extra/readme.md",
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    "manual.pdf"
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  "_realowner": "oganm",
  "_cranurl": true,
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      "date": "2018-01-18"
    },
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      "date": "2019-03-29"
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    "%>%",
    "%$%",
    "autoTranslate",
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    "getGeneHistory",
    "getGeneInfo",
    "getHomologene",
    "homologene",
    "human2mouse",
    "mouse2human",
    "updateHomologene",
    "updateIDs"
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      "name": "homologeneData",
      "title": "homologeneData",
      "object": "homologeneData",
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        "Gene.ID",
        "Gene.Symbol",
        "Taxonomy"
      ],
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      "table": true,
      "tojson": true
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    {
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      "title": "homologeneData2",
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      "class": [
        "data.frame"
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        "Gene.Symbol",
        "Taxonomy",
        "Gene.ID"
      ],
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      "table": true,
      "tojson": true
    },
    {
      "name": "homologeneVersion",
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      "object": "homologeneVersion",
      "class": [
        "integer"
      ],
      "fields": [],
      "table": false,
      "tojson": true
    },
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      "object": "taxData",
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        "name_txt"
      ],
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      "tojson": true
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      "title": "Attempt to automatically translate a gene list",
      "topics": [
        "autoTranslate"
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      "title": "Query DIOPT database",
      "topics": [
        "diopt"
      ]
    },
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      "page": "getGeneHistory",
      "title": "Download gene history file",
      "topics": [
        "getGeneHistory"
      ]
    },
    {
      "page": "getGeneInfo",
      "title": "Download gene symbol information",
      "topics": [
        "getGeneInfo"
      ]
    },
    {
      "page": "getHomologene",
      "title": "Get the latest homologene file",
      "topics": [
        "getHomologene"
      ]
    },
    {
      "page": "homologene",
      "title": "Get homologues of given genes",
      "topics": [
        "homologene"
      ]
    },
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      "title": "homologeneData",
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        "homologeneData"
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      ]
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        "homologeneVersion"
      ]
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      ]
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