Package: homologene 1.7.68.23.10.31

homologene: Quick Access to Homologene and Gene Annotation Updates

A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.

Authors:Ogan Mancarci [aut, cre], Leon French [ctb]

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homologene.pdf |homologene.html✨
homologene/json (API)
NEWS

# Install 'homologene' in R:
install.packages('homologene', repos = c('https://oganm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oganm/homologene/issues

Datasets:

On CRAN:

Conda:

bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper

7.87 score 42 stars 4 packages 164 scripts 757 downloads 9 mentions 13 exports 44 dependencies

Last updated 1 years agofrom:9a9f99c4b5. Checks:1 OK, 7 WARNING. Indexed: yes.

TargetResultLatest binary
Doc / VignettesOKFeb 24 2025
R-4.5-winWARNINGFeb 24 2025
R-4.5-macWARNINGFeb 24 2025
R-4.5-linuxWARNINGFeb 24 2025
R-4.4-winWARNINGFeb 24 2025
R-4.4-macWARNINGFeb 24 2025
R-4.3-winWARNINGFeb 24 2025
R-4.3-macWARNINGFeb 24 2025

Exports:%<>%%>%%$%autoTranslatedioptgetGeneHistorygetGeneInfogetHomologenehomologenehuman2mousemouse2humanupdateHomologeneupdateIDs

Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrlangrvestselectrstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithrxml2