Package: homologene 1.7.68.23.10.31

homologene: Quick Access to Homologene and Gene Annotation Updates

A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.

Authors:Ogan Mancarci [aut, cre], Leon French [ctb]

homologene_1.7.68.23.10.31.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
homologene/json (API)

# Install 'homologene' in R:
install.packages('homologene', repos = c('https://oganm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oganm/homologene/issues

Datasets:

On CRAN:

Conda:

bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper

8.43 score 49 stars 5 packages 254 scripts 1.6k downloads 9 mentions 13 exports 41 dependencies

Last updated from:9a9f99c4b5. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develERROR141
source / vignettesOK171
linux-releaseERROR134
macos-releaseERROR141
macos-oldrelERROR180
windows-develERROR91
windows-releaseERROR79
windows-oldrelERROR75
wasm-releaseOK99

Exports:%<>%%>%%$%autoTranslatedioptgetGeneHistorygetGeneInfogetHomologenehomologenehuman2mousemouse2humanupdateHomologeneupdateIDs

Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrlangrvestselectrsystibbletidyselecttzdbutf8vctrsvroomwithrxml2