Package: homologene 1.7.68.23.10.31
homologene: Quick Access to Homologene and Gene Annotation Updates
A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.
Authors:
homologene_1.7.68.23.10.31.tar.gz
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homologene.pdf |homologene.html✨
homologene/json (API)
NEWS
| # Install 'homologene' in R: |
| install.packages('homologene', repos = c('https://oganm.r-universe.dev', 'https://cloud.r-project.org')) |
Bug tracker:https://github.com/oganm/homologene/issues
- homologeneData - HomologeneData
- homologeneData2 - HomologeneData2
- homologeneVersion - Version of homologene used
- taxData - Names and ids of included species
bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper
Last updated 1 years agofrom:9a9f99c4b5. Checks:OK: 1 WARNING: 6. Indexed: yes.
| Target | Result | Date |
|---|---|---|
| Doc / Vignettes | OK | Oct 27 2024 |
| R-4.5-win | WARNING | Oct 27 2024 |
| R-4.5-linux | WARNING | Oct 27 2024 |
| R-4.4-win | WARNING | Oct 27 2024 |
| R-4.4-mac | WARNING | Oct 27 2024 |
| R-4.3-win | WARNING | Oct 27 2024 |
| R-4.3-mac | WARNING | Oct 27 2024 |
Exports:%<>%%>%%$%autoTranslatedioptgetGeneHistorygetGeneInfogetHomologenehomologenehuman2mousemouse2humanupdateHomologeneupdateIDs
Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrfansigenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrlangrvestselectrstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithrxml2
Readme and manuals
Help Manual
| Help page | Topics |
|---|---|
| Attempt to automatically translate a gene list | autoTranslate |
| Query DIOPT database | diopt |
| Download gene history file | getGeneHistory |
| Download gene symbol information | getGeneInfo |
| Get the latest homologene file | getHomologene |
| Get homologues of given genes | homologene |
| homologeneData | homologeneData |
| homologeneData2 | homologeneData2 |
| Version of homologene used | homologeneVersion |
| Human/mouse wraper for homologene | human2mouse |
| Mouse/human wraper for homologene | mouse2human |
| Names and ids of included species | taxData |
| Update homologene database | updateHomologene |
| Update gene IDs | updateIDs |
