Package: homologene 1.7.68.23.10.31

homologene: Quick Access to Homologene and Gene Annotation Updates

A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.

Authors:Ogan Mancarci [aut, cre], Leon French [ctb]

homologene_1.7.68.23.10.31.tar.gz
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manual.pdf |manual.html✨
card.svg |card.png
homologene/json (API)
NEWS

# Install 'homologene' in R:
install.packages('homologene', repos = c('https://oganm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oganm/homologene/issues

Datasets:

On CRAN:

Conda:

bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper

8.41 score 49 stars 5 packages 239 scripts 1.6k downloads 9 mentions 13 exports 43 dependencies

Last updated from:9a9f99c4b5. Checks:7 WARNING, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64WARNING149
source / vignettesOK187
linux-release-x86_64WARNING145
macos-release-arm64WARNING169
macos-oldrel-arm64WARNING173
windows-develWARNING95
windows-releaseWARNING90
windows-oldrelWARNING89
wasm-releaseOK109

Exports:%<>%%>%%$%autoTranslatedioptgetGeneHistorygetGeneInfogetHomologenehomologenehuman2mousemouse2humanupdateHomologeneupdateIDs

Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrlangrvestselectrstringistringrsystibbletidyselecttzdbutf8vctrsvroomwithrxml2