Package: homologene 1.7.68.23.10.31

homologene: Quick Access to Homologene and Gene Annotation Updates

A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.

Authors:Ogan Mancarci [aut, cre], Leon French [ctb]

homologene_1.7.68.23.10.31.tar.gz
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manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
homologene/json (API)

# Install 'homologene' in R:
install.packages('homologene', repos = c('https://oganm.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/oganm/homologene/issues

Datasets:

On CRAN:

Conda:

bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper

8.49 score 49 stars 5 packages 250 scripts 1.9k downloads 9 mentions 13 exports 41 dependencies

Last updated from:9a9f99c4b5. Checks:7 ERROR, 2 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-devel-x86_64ERROR140
source / vignettesOK227
linux-release-x86_64ERROR154
macos-release-arm64ERROR159
macos-oldrel-arm64ERROR145
windows-develERROR97
windows-releaseERROR92
windows-oldrelERROR92
wasm-releaseOK103

Exports:%<>%%>%%$%autoTranslatedioptgetGeneHistorygetGeneInfogetHomologenehomologenehuman2mousemouse2humanupdateHomologeneupdateIDs

Dependencies:askpassassertthatbitbit64clicliprcpp11crayoncurldplyrgenericsgluehmshttrjsonlitelifecyclemagrittrmimeopensslpillarpkgconfigprettyunitsprogresspurrrR.methodsS3R.ooR.utilsR6readrrlangrvestselectrsystibbletidyselecttzdbutf8vctrsvroomwithrxml2