homologene - Quick Access to Homologene and Gene Annotation Updates
A wrapper for the homologene database by the National Center for Biotechnology Information ('NCBI'). It allows searching for gene homologs across species. Data in this package can be found at <ftp://ftp.ncbi.nih.gov/pub/HomoloGene/build68/>. The package also includes an updated version of the homologene database where gene identifiers and symbols are replaced with their latest (at the time of submission) version and functions to fetch latest annotation data to keep updated.
Last updated 10 months ago
bioinformaticshomologenemancarci-2017ncbi-taxonomyogan-biospecieswrapper
40 stars 3.67 score 44 dependencies 2 dependentsgemma.R - A wrapper for Gemma's Restful API to access curated gene expression data and differential expression analyses
Low- and high-level wrappers for Gemma's RESTful API. They enable access to curated expression and differential expression data from over 10,000 published studies. Gemma is a web site, database and a set of tools for the meta-analysis, re-use and sharing of genomics data, currently primarily targeted at the analysis of gene expression profiles.
Last updated 1 months ago
softwaredataimportmicroarraysinglecellthirdpartyclientdifferentialexpressiongeneexpressionbayesianannotationexperimentaldesignnormalizationbatcheffectpreprocessingbioinformaticsgemmagenomicstranscriptomics
10 stars 2.76 score 63 dependencies